2018 – present – postdoctoral researcher, Department of Medical Biochemistry and Microbiology, Comparative Genetics and Functional Genomics, Uppsala University, Sweden.
2013 – 2018 – Ph.D. in Evolutionary Functional Genomics, Department of Ecology and Genetics, Uppsala University, Sweden.
1st semester – Uppsala University, Sweden.
2nd semester – University of Montpellier II, France.
3rd semester – Max Planck Institute for Evolutionary Biology, Germany.
4th semester – Harvard University, USA.
2009 – 2010 – M.Sc. in Biology, V. N. Karazin Kharkiv National University, Ukraine.
2005 – 2009 – B.Sc. in Biology, V. N. Karazin Kharkiv National University, Ukraine
- Design of experiments
- Population genetics analyses on genomic data
- Gene expression analyses (RNA-Seq and microarray)
- Functional analyses of genomic data
- Programming in Python, R, awk, Shell, Scala
- Git version control
- Snakemake workflow management
- R Markdown and Jupyter Notebooks
- Proficient in Linux OS
- LaTeX writing
- Scientific writing
- Public speaking
- Online and offline teaching
Please, see my Research page for the description of the projects I worked on.
My PhD program included 20% of teaching. I taught the practical parts of the following courses:
- Genome Bioinformatics
- Genome Sequence Data Analyses
- Population Genetics Analyses
- Big Data Analysis with Apache Spark (genomic data)
- R project
- Evolutionary Processes
I also teach how to use Linux and open-source software on YouTube.
Internship and Training
25 – 27 Mar, 2019 – Sustainable Software Development, Stockholm, Sweden.
25 – 27 Mar 2018 - Population Genetics and Big Data workshop, Uppsala, Sweden.
26 Nov 2017 - Jan 5 2018 - Course project, Scalable Data Science course, Uppsala, Sweden.
13 Jan 2017 - “To awk or not to…”, Uppsala, Sweden.
24 Oct - 4 Nov 2016 - Course project, Practical python programming course, Uppsala, Sweden.
19 – 28 June 2015 – Research visit to Stephen Wright Lab, University of Toronto, Toronto, Canada.
24 – 25 Mar 2015 – Approximate Bayesian Computation by Daniel Wegmann, Uppsala University, Sweden.
16 – 27 Jan 2012 – European course of Comparative Genomics, Ecole Normale Supérieure de Lyon, Lyon, France.
Please, see my Publications page for the list of papers.
Grants and Awards
2013 – SMBE Travel Grant Award to attend the SMBE Annual Conference in Chicago, USA.
2013 – National Geographic Society’s Global Exploration Fund for the project “Hidden biodiversity on the Roof of the World”, an expedition to the Pamir Mountains (Tajikistan, Uzbekistan, Kyrgyzstan).
2011 – Erasmus Mundus Scholarship for Master’s studies (2-years MEME program).
- English (TOEFL ibt 102)
- Ukrainian (native)
- Russian (native)
- Swedish (SFI level C)