This Snakemake checkpoint tutorial shows how to run Snakemake when the number of outputs is dynamic, e.g. file names are unknown until the rule is executed....

This pipeline calls germline copy number variants (CNV) with GATK 4 and Snakemake. It uses the cohort mode, so the CNV are inferred from all samples together....

This post will guide you on how to get GEM mappability and convert it to BED file. Links to GEM library and all necessary conversion scripts are provided....

By creating a duty schedule in R you avoid bias and save time. You just provide a list of people and get a PDF of the duty schedule....

You can easily change the Docker default storage location by creating the daemon.json file and pointing to another location in that file....